Claude Task: Complete Missing Foundational Paper Cards and Cross-Link Updates

You are Claude running through the claude-reviewer Hermes profile. Hermes is the orchestrator and verifier. Work only inside:

/Users/bylee/Documents/Research_Knowledge/ECC_Research_Atlas/

Goal

Continue the ECC Research Atlas system build by completing the 5 missing paper cards for already-preserved foundational papers and updating cross-link / graph planning files accordingly.

Context

The Atlas now preserves 13 foundational papers under 00_sources/foundational_papers/. The integration report says 5 paper cards are still missing:

1. Lin & Li 1997 — crack bridging with slip-hardening interfaces
2. Redon et al. 2001 — PVA fiber interface measurement/modification
3. Li, Wang & Wu 2001 — PVA-ECC tensile strain-hardening
4. Li et al. 2002 — PVA-ECC interface tailoring
5. Yang et al. 2008 — fiber-bridging constitutive law

Source notes and extracted full text already exist for all five.

Non-negotiable constraints

1. Do not fabricate DOI, exact page numbers, figure numbers, table numbers, or numerical claims. If not directly verified from source notes/full text, mark needs verification.
2. Do not edit raw PDFs or raw extracted text.
3. Do not edit 06_lab_position/.
4. Prefer additive files and minimal targeted edits.
5. Keep provenance clear: source note vs extracted text vs Atlas interpretation.
6. Do not rewrite existing concept nodes unless necessary; if adding links, use short additive sections.

Source files to inspect

Source notes

• 00_sources/foundational_papers/source_notes/lin-1997-crack-bridging-in-fiber-reinforced-cementitious.md
• 00_sources/foundational_papers/source_notes/redon-2001-measuring-and-modifying-interface-properties-of.md
• 00_sources/foundational_papers/source_notes/li-2001-pva-ecc-tensile-strain-hardening.md
• 00_sources/foundational_papers/source_notes/li-2002-interface-tailoring-for-strain-hardening-polyvinyl.md
• 00_sources/foundational_papers/source_notes/yang-2008-fiber-bridging-constitutive-law-of.md

Full text

• Matching files in 00_sources/foundational_papers/extracted_text/.

Existing Atlas files

• 07_visualization/foundational_paper_integration_report.md
• 07_visualization/cross_link_map.md
• 07_visualization/full_graph_candidate_edges.csv
• 02_concepts/fiber_bridging_law.md
• 02_concepts/strain_hardening_criteria.md
• 02_concepts/micromechanics_based_design.md
• 02_concepts/flaw_design.md
• 05_experiments/direct_tensile_test.md
• 00_sources/victor_li_book/chapter2_equations_normalized.md

Deliverables

A. Five missing paper cards

Create these files in 03_papers/:

1. lin_li_1997_crack_bridging_slip_hardening.md
2. redon_etal_2001_pva_interface_properties.md
3. li_wang_wu_2001_pva_ecc_tensile_strain_hardening.md
4. li_wu_wang_etal_2002_interface_tailoring_pva_ecc.md
5. yang_etal_2008_fiber_bridging_constitutive_law.md

Each paper card must include:

• bibliographic metadata
• source paths
• why the paper matters for the Atlas
• direct evidence extracted from source note/full text
• key equations/parameters if directly available
• Atlas node links
• graph implications
• verification status

B. Update foundational paper integration report

Update 07_visualization/foundational_paper_integration_report.md:

• show that all 13 foundational papers now have paper cards
• list all 13 paper cards
• note remaining evidence gaps: exact page/figure/table verification, DOI checks, claim-evidence matrix expansion

C. Update cross-link map

Update 07_visualization/cross_link_map.md:

• Under Micromechanics core, add paper cards for Lin 1997, Yang 2008, Li 2001, Li 2002, Redon 2001 as appropriate.
• Under Processing and characterization, ensure Li & Li 2012 and Zhou 2012 are present.
• Under Durability/service-life or Direct tension/test-related section, add Li 2001 where relevant.

D. Candidate graph edge promotion plan

Create:

07_visualization/foundational_paper_graph_edge_promotion_plan.md

Include:

• candidate edges that can now be promoted to confirmed after these paper cards
• evidence source paper card for each edge
• relation type
• whether to update full_graph_candidate_edges.csv now or leave for a subsequent automated pass

Do not directly modify full_graph_candidate_edges.csv unless the relation already exists and the status field can be safely changed without restructuring the CSV.

E. Update paper inventory

Create or update:

03_papers/foundational_paper_cards_index.md

List all 13 foundational paper cards with source paths and main Atlas nodes.

Verification before finishing

Verify:

1. all five new paper card files exist;
2. integration report says all 13 have paper cards;
3. cross_link_map contains references to the five new card filenames;
4. graph edge promotion plan exists;
5. paper card index exists;
6. no file under originals/, extracted_text/, or 06_lab_position/ was modified.

Return a concise completion summary with files created/modified and unresolved blockers.